Illumina HiSeq X paired end sequencing of SAMD00748093 - SRA

DRX514657: Illumina HiSeq X paired end sequencing of SAMD00748093
1 ILLUMINA (Illumina HiSeq X) run: 6.3M spots, 1.9G bases, 880Mb downloads

Submitted by: Nagoya City University Graduate School of Medical Sciences (Nagoya City University Graduate School of Medical )

Study: Rapid detection of Epstein-Barr viral genomes from formalin-fixed, paraffin-embedded samples

PRJDB17571 • DRP012339 • All experiments • All runs

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Epstein-Barr virus (EBV) is associated with several hematological and epithelial cell malignancies. To identify the presence of EBV in formalin-fixed, paraffin-embedded (FFPE) samples, we developed a rapid detection method. We tested gastic cancer samples with the method, and we extracted DNA and performed target capture-based whole-genome sequencing of the viral genome from samples carrying EBV.

Sample: Epstein-Barr virus genome obtained from a patient (UPN1628) with gastric cancer

SAMD00748093 • DRS428309 • All experiments • All runs

Organism: human gammaherpesvirus 4

Library:

Instrument: Illumina HiSeq X

Strategy: WGS

Source: GENOMIC

Selection: Hybrid Selection

Layout: PAIRED

Construction protocol:

Runs: 1 run, 6.3M spots, 1.9G bases, 880Mb

Run	# of Spots	# of Bases	Size	Published
DRR530784	6,280,046	1.9G	880Mb	2024-12-10

ID:: 36502971

SRA

Sequence Read Archive

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